mRNA manufacturing workflow by in vitro transcription

mRNA is attracting attention as an innovative treatment for a wide range of diseases. Our mRNA synthesis service is optimized from template plasmid design and construction to mRNA synthesis by IVT using our unique platform.

mRNA
design support

Gene synthesis

Optimization

Manufacturing

LNP

Customized mRNA synthesis to meet your needs

Our services can be flexibly customized to meet the requirements of your project. By designing and optimizing mRNA in the early stages of drug discovery, we ensure a seamless transition to scale-up and GMP manufacturing.

mRNA合成の図解
5’CapORFModified nucleic acidUTRPoly A
・CleanCap ® M6
・CleanCap ® AG
・CleanCap ® AG 3’OMe
・Enzymatic capping
・Uncapped
・Catalog sequence
・Customer’s sequence
・Codon optimization
・Linker strategies
・N1-Methyl-Pseudo-UTP
・5-Methoxy-UTP
・Pseudo-UTP
・5-Methyl-UTP
・5-Methyl-CTP
・Unmodified
・Elixirgen UTRs
・Customer’s UTRs
・UTR optimization
・120 nt A tail
・100 nt A tail
・80 nt A tail
・Custom tail length
・Linker strategies

*Our company has licensed the innovative 5' cap addition technology “CleanCap®” from TriLink Biotechnologies, Inc. (hereinafter referred to as “Trilink”).

Other options

PurificationLNP
・Silica column + centrifugal purification
・Oligo dT method
・Reverse phase LC method
・Other (please consult us)
・Standard recommended prescription
・Customer prescription

Various optimization options

Capping

By adding a cap structure to the 5′ end of mRNA molecules, resistance to degradation by exonucleases is greatly improved, resulting in significantly enhanced stability and translation efficiency within cells. The enzymatic method offers high flexibility, and CleanCap® achieves high purity and high capping efficiency in a single step.

Modified nucleic acid

By chemically modifying bases such as uridine, immune induction by pattern recognition receptors (TLRs, etc.) is suppressed, minimizing inflammatory responses. In particular, UTP modification reduces immunogenicity without compromising translation efficiency and improves the sustainability of protein expression.

In human fibroblasts, strong GFP fluorescence was observed even after 8 days using synthetic GFP mRNA containing modified nucleic acid A.

UTR optimization

By optimizing the sequence and secondary structure of the 5'- and 3'-untranslated regions (UTRs), ribosome binding and recycling efficiency are improved, thereby extending mRNA stability and translation duration. Proper placement of stabilization signals and RNA-binding protein recognition sites is key.

Cell: HEK293
CDS: eGFP
Cap: CleanCap® Reagent AG (3’OMe)
Modified nucleic acid: N1-Methyl-ΨU

Codon optimization

By replacing codons in the amino acid sequence of the target protein with those that are frequently used in the host cell, the translation speed of the ribosome is increased, maximizing protein production. GC content and secondary structure are also taken into consideration to achieve both translation efficiency and mRNA stability.

Purification

By thoroughly removing impurities such as incomplete transcription products, dimers, and DNA template residues, we reduce the immune response and cytotoxicity induced, ensuring safety and reproducibility. We select purification processes appropriate for the application, such as the oligo-dT method or reverse-phase LC method.

LNP formulation

Encapsulating mRNA in lipid nanoparticles (LNP) protects it from degradation by enzymes in the bloodstream and intercellular spaces, significantly improving uptake efficiency into target cells. LNP promotes endosomal escape after internalization and optimizes mRNA release into the cytoplasm.

Service Package

We smoothly provide the necessary format and quantity of mRNA according to your application needs.

Discovery Package: Small-lot, high-mix production for initial screening purposes

Volume100 μg (Guaranteed yield: 50 μg *1)
CappingCleanCap AG-3'OMe recommended *1
Modified Nucleic AcidN1-Methyl-Pseudo-UTP recommended *1
TemplateCustomer-supplied or package including template synthesis costs
QCConcentration test (NanoDrop) / Integrity test (CE)
PriceIVT only 100,000 JPY / Template synthesis + IVT 200,000 JPY

Research Package: Non-GMP Manufacturing for Vitro/Vivo Experiments

Volume0.5–100 mg (Guaranteed yield: 50% of target)
CappingCleanCap or Enzymatic Capping *1
Modified Nucleic AcidVarious UTP modifications recommended *1
TemplatePackage including template synthesis costs
QCConcentration test (NanoDrop)/ Integrity test (CE)/ Endotoxin, etc.
PriceInquiry

Preclinical Package: Non-GMP manufacturing for toxicological purposes

Volume100–1,000 mg (Guaranteed yield: 80% of target)
CappingCleanCap or Enzymatic Capping *1
Modified Nucleic AcidVarious UTP modifications recommended (consultation available)
TemplateTemplate synthesis costs included in package
QCTest items comply with USP 3.0 *1, 2
PriceInquiry

*1 Consultation available
*2 As of May 2025

Quality Contorol

We offer mRNA quality testing. We utilize domestic facilities for mRNA drug-specific analysis items, enabling quick and flexible response.
(Available as an additional option for mRNA synthesis.)

QualityAttributeMethodDiscovery
Pack
ResearchPre-clinical
IdentitySequence verificationSanger sequence
ContentRNA content measurement
(concentration, A260/A280 ratio)
Absorbance (UV)
IntegritymRNA integrityCapillary gel electrophoresis (CGE)
PurityPurity verificationTo be discussed
5' capping efficiencyLC-MS
3' poly(A) tail lengthLC-MS
Impurities originating from the productdsRNAELISA
Aggregation rateTo be discussed
Short-chain contamination rateTo be discussed
Residual DNA templateqPCR
Residual nucleotidesTo be discussed
Residual reagents, etc.To be discussed
Residual T7 polymeraseELISA
PotencyProtein expressionTo be discussed
SafetyEndotoxin testUSP <85>、JP<4.01>
Microbial limit testUSP <61>, <62>, <1115>
JP<4.05>
OtherProperties confirmationUSP <790>
Residual solventUSP <467>、JP<2.46>
pHUSP <791>、JP<2.54>

Ref. : Analytical Procedures for Quality of mRNA Vaccines and Therapeutics (Draft Guidelines: 3rd Edition)

*Please contact us if you would like additional quality control and evaluation.